Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxyl transferase domain protein | M099_0817 | Not Available | Positive | 871503 - 873056 | 56473.9 |
| oxaloacetate decarboxylase, gamma chain family protein | M099_0818 | Not Available | Positive | 873084 - 874013 | 34102.0 |
| hlyd secretion family protein | M099_0819 | Not Available | Positive | 874037 - 874468 | 15152.5 |
| sodium ion-translocating decarboxylase, beta subunit | M099_0820 | Not Available | Positive | 874470 - 875630 | 40880.4 |
| cyclo-malto-dextrinase c-terminal domain protein | M099_0821 | Not Available | Positive | 875805 - 876053 | 9267.24 |
| short chain dehydrogenase family protein | M099_0822 | Not Available | Negative | 876149 - 876907 | 27233.0 |
| esterase family protein | M099_0823 | Not Available | Negative | 876912 - 877730 | 30789.0 |
| cadmium-translocating p-type atpase | M099_0824 | Not Available | Positive | 877828 - 879546 | 62472.2 |
| ferric uptake regulator family protein | M099_0825 | Not Available | Positive | 879560 - 879985 | 16179.7 |
| acyltransferase family protein | M099_0826 | Not Available | Negative | 880158 - 881309 | 43063.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

