Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| shikimate dehydrogenase substrate binding domain protein | M099_0767 | Not Available | Positive | 821114 - 821854 | 27732.7 |
| prolyl oligopeptidase family protein | M099_0768 | Not Available | Positive | 821862 - 822812 | 36526.2 |
| repair family protein | M099_0769 | Not Available | Positive | 822809 - 823729 | 33360.1 |
| lema family protein | M099_0770 | Not Available | Positive | 823766 - 824347 | 21752.9 |
| chorismate synthase | M099_0771 | Not Available | Positive | 824556 - 825632 | 39168.8 |
| peptidase m20/m25/m40 family protein | M099_0772 | Not Available | Positive | 825646 - 826998 | 49896.1 |
| putative nadh dehydrogenase/nad(p)h nitroreductase | M099_0773 | Not Available | Positive | 827011 - 827640 | 23122.0 |
| hypothetical protein | M099_0774 | Not Available | Negative | 827728 - 827976 | 9308.13 |
| hypothetical protein | M099_0775 | Not Available | Negative | 828182 - 828505 | 11713.4 |
| xanthine phosphoribosyltransferase | M099_0776 | Not Available | Positive | 828862 - 829428 | 20888.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

