Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane family protein | M099_0757 | Not Available | Negative | 808194 - 809636 | 54962.9 |
| tonb-linked outer membrane, susc/raga family protein | M099_0758 | Not Available | Negative | 809649 - 812930 | 123201.0 |
| ahpc/tsa family protein | M099_0759 | Not Available | Negative | 812960 - 814300 | 51236.8 |
| radical sam superfamily protein | M099_0760 | Not Available | Positive | 814658 - 815926 | 48564.8 |
| putative dna metabolism protein | M099_0761 | Not Available | Positive | 815923 - 816690 | 30614.9 |
| trna pseudouridine(38-40) synthase | M099_0762 | Not Available | Negative | 816656 - 817429 | 29723.3 |
| hypothetical protein | M099_0763 | Not Available | Negative | 817464 - 818138 | 24792.2 |
| uvrd/rep helicase n-terminal domain protein | M099_0764 | Not Available | Positive | 818296 - 819300 | 37699.4 |
| saicar synthetase family protein | M099_0765 | Not Available | Positive | 819321 - 820265 | 35902.1 |
| ubiquinone/menaquinone biosynthesis methyltransferase family protein | M099_0766 | Not Available | Positive | 820358 - 821095 | 27936.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

