Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xylose isomerase | M099_0707 | Not Available | Negative | 755686 - 757002 | 49038.9 |
| carbohydrate kinase, fggy family | M099_0708 | Not Available | Negative | 757094 - 758587 | 53447.6 |
| nudix domain protein | M099_0709 | Not Available | Negative | 758760 - 759494 | 28614.6 |
| response regulator | M099_0710 | Not Available | Positive | 759871 - 760215 | 13250.2 |
| bacterial sugar transferase domain protein | M099_0711 | Not Available | Positive | 760222 - 760437 | 8490.48 |
| bacterial sugar transferase family protein | M099_0712 | Not Available | Positive | 760522 - 761397 | 33288.6 |
| outer membrane efflux family protein | M099_0713 | Not Available | Positive | 761434 - 762297 | 32645.0 |
| putative transmembrane protein | M099_0714 | Not Available | Positive | 762303 - 764450 | 82538.7 |
| o-antigen ligase like membrane family protein | M099_0715 | Not Available | Positive | 764454 - 765914 | 54858.9 |
| glycosyl transferase 2 family protein | M099_0716 | Not Available | Positive | 765895 - 766800 | 34487.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

