Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphorylase superfamily protein | M099_0647 | Not Available | Positive | 691582 - 692460 | 32767.5 |
| gaf domain protein | M099_0648 | Not Available | Positive | 692669 - 693154 | 18138.7 |
| trna modification gtpase trme | M099_0649 | Not Available | Positive | 693165 - 694661 | 55211.2 |
| dna binding, excisionase family domain protein | M099_0650 | Not Available | Positive | 694946 - 695821 | 35230.4 |
| phage integrase family protein | M099_0651 | Not Available | Positive | 695939 - 697054 | 43867.9 |
| putative transmembrane protein | M099_0652 | Not Available | Positive | 697510 - 698232 | 27565.8 |
| dna binding, excisionase family domain protein | M099_0653 | Not Available | Positive | 698326 - 698700 | 14356.5 |
| aaa domain protein | M099_0654 | Not Available | Positive | 698706 - 699776 | 40315.3 |
| hypothetical protein | M099_0655 | Not Available | Positive | 700227 - 700403 | 6610.99 |
| hypothetical protein | M099_0656 | Not Available | Positive | 700413 - 700526 | 4226.95 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

