Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor plug domain protein | M099_0036 | Not Available | Positive | 34913 - 37192 | 87418.4 |
| putative transmembrane protein | M099_0037 | Not Available | Negative | 37392 - 37706 | 12155.1 |
| asnc family protein | M099_0038 | Not Available | Negative | 37713 - 38171 | 17087.9 |
| hypothetical protein | M099_0039 | Not Available | Negative | 38288 - 38692 | 16110.1 |
| transporter associated domain protein | M099_0040 | Not Available | Negative | 38694 - 39980 | 48001.9 |
| nudix domain protein | M099_0041 | Not Available | Positive | 40115 - 40639 | 19814.6 |
| tol-pal system protein ybgf | M099_0042 | Not Available | Positive | 40670 - 43552 | 110342.0 |
| putative tonb-dependent receptor | M099_0043 | Not Available | Positive | 43576 - 45273 | 64336.8 |
| dna topoisomerase i | M099_0044 | Not Available | Positive | 45395 - 47833 | 91403.2 |
| shikimate kinase family protein | M099_0045 | Not Available | Positive | 47857 - 48357 | 19358.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

