Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-antigen ligase family protein | M099_0544 | Not Available | Negative | 581905 - 583152 | 47528.7 |
| efflux transporter, rnd family, mfp subunit | M099_0545 | Not Available | Negative | 583156 - 584229 | 39541.2 |
| ftsx-like permease family protein | M099_0546 | Not Available | Negative | 584231 - 585457 | 45882.5 |
| hypothetical protein | M099_0547 | Not Available | Negative | 585473 - 585592 | 4480.22 |
| tetratricopeptide repeat family protein | M099_0548 | Not Available | Negative | 586093 - 587664 | 61245.4 |
| atp-dependent dna helicase recq | M099_0549 | Not Available | Negative | 587995 - 590175 | 81679.6 |
| atp-dependent clp protease, atp-binding subunit clpx | M099_0550 | Not Available | Negative | 590333 - 591583 | 46679.9 |
| clp protease family protein | M099_0551 | Not Available | Negative | 591707 - 592378 | 24864.8 |
| trigger factor | M099_0552 | Not Available | Negative | 592559 - 593914 | 51542.8 |
| rna recognition motif family protein | M099_0553 | Not Available | Positive | 594302 - 594541 | 8804.49 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

