Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4fe-4s binding domain protein | M099_0494 | Not Available | Positive | 545028 - 545795 | 28610.7 |
| yceg-like family protein | M099_0495 | Not Available | Negative | 545845 - 546879 | 39576.9 |
| alpha-l-arabinofuranosidase | M099_0496 | Not Available | Positive | 547092 - 548603 | 57058.1 |
| transposase dde domain protein | M099_0497 | Not Available | Negative | 548731 - 549531 | 31375.9 |
| dna/rna non-specific endonuclease family protein | M099_0498 | Not Available | Negative | 550505 - 551362 | 32360.0 |
| alpha-l-fucosidase family protein | M099_0499 | Not Available | Positive | 551487 - 552836 | 51875.6 |
| hypothetical protein | M099_0500 | Not Available | Positive | 552855 - 554894 | 79628.4 |
| hypothetical protein | M099_0501 | Not Available | Positive | 554977 - 555099 | 4799.96 |
| putative transcriptional regulator upxy-like protein | M099_0502 | Not Available | Positive | 555459 - 556148 | 26764.4 |
| n-acetylmuramoyl-l-alanine amidase family protein | M099_0503 | Not Available | Negative | 556214 - 556633 | 15438.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

