Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha amylase, catalytic domain protein | M099_4588 | Not Available | Positive | 4874007 - 4875704 | 64722.6 |
| hpaii restriction endonuclease family protein | M099_4589 | Not Available | Negative | 4875833 - 4876921 | 41401.0 |
| hypothetical protein | M099_4590 | Not Available | Positive | 4877128 - 4877319 | 7323.45 |
| choloylglycine hydrolase | M099_4591 | Not Available | Positive | 4877422 - 4878480 | 39388.3 |
| threonyl and alanyl trna synthetase second additional domain protein | M099_4592 | Not Available | Positive | 4878796 - 4879173 | 14406.6 |
| hsp20/alpha crystallin family protein | M099_4593 | Not Available | Positive | 4879510 - 4879881 | 13943.5 |
| transposase, mutator family protein | M099_4594 | Not Available | Positive | 4880023 - 4881255 | 46997.8 |
| sensory box protein | M099_4595 | Not Available | Negative | 4881500 - 4883845 | 89810.8 |
| carbamoyl-phosphate synthase, large subunit | M099_4596 | Not Available | Negative | 4884013 - 4887240 | 119763.0 |
| carbamoyl-phosphate synthase, small subunit | M099_4597 | Not Available | Negative | 4887264 - 4888340 | 39980.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

