Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux transporter, rnd family, mfp subunit | M099_0424 | Not Available | Negative | 467457 - 468524 | 39289.3 |
| bacterial regulatory helix-turn-helix s, arac family protein | M099_0425 | Not Available | Positive | 468702 - 469580 | 34321.7 |
| hypothetical protein | M099_0426 | Not Available | Positive | 469733 - 470410 | 26282.4 |
| glcnac-pi de-n-acetylase family protein | M099_0427 | Not Available | Negative | 470586 - 472574 | 74771.3 |
| glucosamine-6-phosphate deaminase | M099_0428 | Not Available | Negative | 472578 - 473369 | 29021.6 |
| major facilitator superfamily protein | M099_0429 | Not Available | Negative | 473415 - 474650 | 44685.5 |
| n-acylglucosamine 2-epimerase family protein | M099_0430 | Not Available | Negative | 474669 - 475865 | 46187.0 |
| dihydrodipicolinate synthetase family protein | M099_0431 | Not Available | Negative | 475878 - 476792 | 33926.9 |
| rok family protein | M099_0432 | Not Available | Positive | 477098 - 478303 | 44586.1 |
| rna polymerase sigma factor, sigma-70 family protein | M099_0433 | Not Available | Positive | 478418 - 479053 | 24920.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

