Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugative transposon tran protein | M099_4478 | Not Available | Negative | 4773942 - 4774793 | 32096.6 |
| dna methylase family protein | M099_4479 | Not Available | Negative | 4774803 - 4775615 | 31592.0 |
| hypothetical protein | M099_4480 | Not Available | Negative | 4775612 - 4775965 | 13721.3 |
| conjugative transposon tram protein | M099_4481 | Not Available | Negative | 4775979 - 4777085 | 40931.0 |
| hypothetical protein | M099_4482 | Not Available | Negative | 4777203 - 4777562 | 14008.0 |
| conjugative transposon trak protein | M099_4483 | Not Available | Negative | 4777600 - 4778214 | 23669.9 |
| hypothetical protein | M099_4484 | Not Available | Negative | 4778242 - 4778664 | 15559.2 |
| phage integrase family protein | M099_4485 | Not Available | Positive | 4778893 - 4780263 | 52219.6 |
| hypothetical protein | M099_4486 | Not Available | Positive | 4780274 - 4781464 | 44324.4 |
| helix-turn-helix domain protein | M099_4487 | Not Available | Positive | 4781638 - 4781949 | 11989.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

