Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolases family 2, sugar binding domain protein | M099_0414 | Not Available | Positive | 453986 - 456490 | 94092.9 |
| n-acetylglucosamine-6-phosphate deacetylase | M099_0415 | Not Available | Positive | 456734 - 457828 | 39717.0 |
| abc transporter family protein | M099_0416 | Not Available | Negative | 458052 - 458705 | 24548.9 |
| putative membrane protein | M099_0417 | Not Available | Negative | 458702 - 459631 | 35540.4 |
| hypothetical protein | M099_0418 | Not Available | Negative | 459708 - 460286 | 22959.1 |
| rna polymerase sigma factor, sigma-70 family protein | M099_0419 | Not Available | Negative | 460299 - 460772 | 19000.9 |
| putative lipoprotein | M099_0420 | Not Available | Negative | 460925 - 461596 | 25596.6 |
| dna-binding family protein | M099_0421 | Not Available | Positive | 462082 - 462705 | 23657.6 |
| outer membrane efflux family protein | M099_0422 | Not Available | Negative | 462920 - 464299 | 51484.0 |
| acrb/acrd/acrf family protein | M099_0423 | Not Available | Negative | 464332 - 467457 | 115891.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

