Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | M099_4368 | Not Available | Negative | 4689578 - 4689745 | 6652.23 |
| tonb-dependent receptor plug domain protein | M099_4369 | Not Available | Negative | 4689760 - 4691360 | 57239.0 |
| hypothetical protein | M099_4370 | Not Available | Negative | 4691694 - 4691806 | 4291.41 |
| sigma-54 interaction domain protein | M099_4371 | Not Available | Negative | 4691807 - 4692435 | 23280.9 |
| hypothetical protein | M099_4372 | Not Available | Positive | 4692446 - 4692577 | 5552.56 |
| phage integrase family protein | M099_4373 | Not Available | Positive | 4692562 - 4693680 | 43299.0 |
| hypothetical protein | M099_4374 | Not Available | Positive | 4693854 - 4693994 | 5402.59 |
| helix-turn-helix domain protein | M099_4375 | Not Available | Positive | 4693991 - 4694302 | 12181.8 |
| putative non-receptor tyrosine-protein kinase tnk1 | M099_4376 | Not Available | Negative | 4694336 - 4694643 | 11610.2 |
| phage integrase family protein | M099_4377 | Not Available | Negative | 4695039 - 4696085 | 40946.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

