Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide-methionine (s)-s-oxide reductase | M099_4356 | Not Available | Positive | 4678632 - 4679117 | 18625.0 |
| ahpc/tsa family protein | M099_4357 | Not Available | Negative | 4679186 - 4680331 | 42891.5 |
| 3-isopropylmalate dehydrogenase | M099_4358 | Not Available | Negative | 4680463 - 4681524 | 39089.9 |
| leua allosteric domain protein | M099_4359 | Not Available | Negative | 4681618 - 4683138 | 56824.1 |
| 3-isopropylmalate dehydratase, small subunit | M099_4360 | Not Available | Negative | 4683144 - 4683740 | 22407.5 |
| 3-isopropylmalate dehydratase, large subunit | M099_4361 | Not Available | Negative | 4683754 - 4685136 | 50035.1 |
| 2-isopropylmalate synthase | M099_4362 | Not Available | Negative | 4685154 - 4686650 | 54450.0 |
| hypothetical protein | M099_4363 | Not Available | Positive | 4687069 - 4687185 | 4553.52 |
| hypothetical protein | M099_4366 | Not Available | Negative | 4687713 - 4688592 | 33444.1 |
| hypothetical protein | M099_4367 | Not Available | Negative | 4688585 - 4689349 | 29518.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

