Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative chitin deacetylase | M099_4336 | Not Available | Negative | 4658994 - 4659161 | 6548.1 |
| pectinesterase family protein | M099_4337 | Not Available | Negative | 4659298 - 4659618 | 11709.9 |
| hypothetical protein | M099_4338 | Not Available | Negative | 4659645 - 4659911 | 10034.1 |
| putative rhamnogalacturonan acetylesterase | M099_4339 | Not Available | Negative | 4659916 - 4660116 | 7464.84 |
| hypothetical protein | M099_4340 | Not Available | Negative | 4660156 - 4660368 | 7845.88 |
| hypothetical protein | M099_4341 | Not Available | Negative | 4660471 - 4660602 | 5303.43 |
| putative lipase | M099_4342 | Not Available | Negative | 4660629 - 4661480 | 32515.9 |
| starch-binding associating with outer membrane family protein | M099_4343 | Not Available | Negative | 4662081 - 4663589 | 56877.3 |
| tonb-linked outer membrane, susc/raga family protein | M099_4344 | Not Available | Negative | 4663611 - 4666832 | 118841.0 |
| hypothetical protein | M099_4345 | Not Available | Negative | 4667817 - 4668083 | 9993.72 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

