Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative outer membrane protein, probably involved in nutrient binding protein | M099_0404 | Not Available | Positive | 435392 - 436894 | 56986.5 |
| bnr repeat-like domain protein | M099_0405 | Not Available | Positive | 437084 - 438667 | 58166.4 |
| glycosyl hydrolase family 20, catalytic domain protein | M099_0406 | Not Available | Positive | 438794 - 440677 | 72465.6 |
| gdsl-like lipase/acylhydrolase family protein | M099_0407 | Not Available | Positive | 440679 - 441344 | 25131.8 |
| gdsl-like lipase/acylhydrolase family protein | M099_0408 | Not Available | Positive | 441341 - 443404 | 77565.1 |
| beta-mannosidase | M099_0409 | Not Available | Positive | 443431 - 445998 | 98692.7 |
| chitobiase/beta-hexosaminidase c-terminal domain protein | M099_0410 | Not Available | Positive | 446060 - 448339 | 84788.9 |
| cyclically-permuted mutarotase family protein | M099_0411 | Not Available | Positive | 448526 - 449653 | 40523.6 |
| f5/8 type c domain protein | M099_0412 | Not Available | Positive | 449650 - 451704 | 77115.8 |
| alpha-1,2-mannosidase family protein | M099_0413 | Not Available | Positive | 451731 - 453983 | 85487.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

