Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ftsx-like permease family protein | M099_4216 | Not Available | Positive | 4558862 - 4561171 | 86390.6 |
| abc transporter family protein | M099_4217 | Not Available | Positive | 4561206 - 4561880 | 24853.2 |
| ftsx-like permease family protein | M099_4218 | Not Available | Positive | 4561900 - 4563249 | 50944.7 |
| transposase dde domain protein | M099_4219 | Not Available | Negative | 4563403 - 4564689 | 49642.2 |
| dna topoisomerase family protein | M099_4220 | Not Available | Negative | 4564838 - 4565431 | 22172.6 |
| hypothetical protein | M099_4221 | Not Available | Positive | 4565432 - 4565561 | 5103.39 |
| starch-binding associating with outer membrane family protein | M099_4222 | Not Available | Negative | 4565683 - 4567179 | 56804.6 |
| tonb-linked outer membrane, susc/raga family protein | M099_4223 | Not Available | Negative | 4567192 - 4570305 | 114462.0 |
| outer membrane efflux family protein | M099_4224 | Not Available | Negative | 4570752 - 4571921 | 43862.6 |
| mmpl family protein | M099_4225 | Not Available | Negative | 4571932 - 4572625 | 25136.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

