Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c-s lyase family protein | M099_4196 | Not Available | Positive | 4538184 - 4539347 | 44389.1 |
| bacterial regulatory, arsr family protein | M099_4197 | Not Available | Positive | 4539869 - 4540195 | 12236.9 |
| thioredoxin domain protein | M099_4198 | Not Available | Positive | 4540273 - 4540506 | 8315.35 |
| hypothetical protein | M099_4199 | Not Available | Positive | 4540517 - 4540960 | 16861.3 |
| cytochrome c biogenesis transmembrane region family protein | M099_4200 | Not Available | Positive | 4540962 - 4541669 | 25781.8 |
| arsenical resistance operon trans-acting repressor arsd family protein | M099_4201 | Not Available | Positive | 4541705 - 4542031 | 12047.8 |
| transport-energizing atpase, trc40/get3/arsa family protein | M099_4202 | Not Available | Positive | 4542060 - 4543184 | 41199.0 |
| transposase dde domain protein | M099_4203 | Not Available | Negative | 4543226 - 4544512 | 49642.2 |
| dna topoisomerase family protein | M099_4204 | Not Available | Positive | 4544603 - 4546527 | 71953.6 |
| shikimate kinase family protein | M099_4205 | Not Available | Positive | 4546551 - 4546649 | 3860.67 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

