Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| calcineurin-like phosphoesterase family protein | M099_4176 | Not Available | Negative | 4519404 - 4521146 | 65563.7 |
| his kinase a domain protein | M099_4177 | Not Available | Negative | 4521158 - 4523161 | 75570.5 |
| dnaj c terminal domain protein | M099_4178 | Not Available | Positive | 4523208 - 4524179 | 35210.0 |
| merr hth regulatory family protein | M099_4179 | Not Available | Positive | 4524195 - 4524482 | 11413.6 |
| yihy family inner membrane domain protein | M099_4180 | Not Available | Positive | 4525160 - 4526479 | 50259.1 |
| riboflavin synthase, alpha subunit | M099_4181 | Not Available | Negative | 4526612 - 4527214 | 22635.2 |
| helix-turn-helix family protein | M099_4182 | Not Available | Positive | 4527419 - 4527994 | 21391.5 |
| amp-binding enzyme family protein | M099_4183 | Not Available | Positive | 4528022 - 4529653 | 61438.4 |
| hypothetical protein | M099_4184 | Not Available | Positive | 4529986 - 4530325 | 13614.4 |
| hypothetical protein | M099_4185 | Not Available | Positive | 4530326 - 4530727 | 15580.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

