Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mate efflux family protein | M099_4156 | Not Available | Positive | 4490306 - 4491658 | 49414.7 |
| sodium/hydrogen exchanger family protein | M099_4157 | Not Available | Positive | 4491655 - 4493103 | 52867.7 |
| natural resistance-associated macrophage family protein | M099_4158 | Not Available | Negative | 4493180 - 4494433 | 45700.9 |
| hypothetical protein | M099_4159 | Not Available | Positive | 4494536 - 4494934 | 15058.6 |
| clostripain family protein | M099_4160 | Not Available | Negative | 4494918 - 4496180 | 46782.5 |
| hypothetical protein | M099_4161 | Not Available | Negative | 4496191 - 4496586 | 15100.5 |
| rna polymerase sigma factor, sigma-70 family protein | M099_4162 | Not Available | Negative | 4496808 - 4497668 | 32805.3 |
| peptidase do family protein | M099_4163 | Not Available | Negative | 4497908 - 4499431 | 53839.6 |
| inner membrane protein ykgb | M099_4164 | Not Available | Negative | 4499753 - 4500343 | 21267.4 |
| helix-turn-helix domain protein | M099_4165 | Not Available | Negative | 4500436 - 4501272 | 32737.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

