Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydrodipicolinate synthetase family protein | M099_4106 | Not Available | Negative | 4438893 - 4439825 | 34056.6 |
| abc transporter family protein | M099_4107 | Not Available | Negative | 4439988 - 4441436 | 55056.9 |
| diaminopimelate epimerase domain protein | M099_4108 | Not Available | Positive | 4441832 - 4441948 | 4300.35 |
| diaminopimelate epimerase family protein | M099_4109 | Not Available | Positive | 4441961 - 4442146 | 7205.79 |
| putative frrb | M099_4110 | Not Available | Positive | 4442161 - 4442886 | 25732.9 |
| hypothetical protein | M099_4111 | Not Available | Positive | 4443056 - 4443181 | 5021.04 |
| dethiobiotin synthase | M099_4112 | Not Available | Negative | 4443330 - 4443974 | 24303.0 |
| methyltransferase domain protein | M099_4113 | Not Available | Negative | 4443989 - 4444774 | 30026.4 |
| hypothetical protein | M099_4114 | Not Available | Negative | 4444756 - 4445409 | 25130.3 |
| aminotransferase class i and ii family protein | M099_4115 | Not Available | Negative | 4445406 - 4446557 | 43105.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

