Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exonuclease family protein | M099_4065 | Not Available | Positive | 4394045 - 4394821 | 29605.2 |
| phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase | M099_4066 | Not Available | Positive | 4394824 - 4396014 | 42948.0 |
| dna repair protein recn | M099_4067 | Not Available | Positive | 4396130 - 4397791 | 62006.0 |
| rna 2'-o ribose methyltransferase substrate binding family protein | M099_4068 | Not Available | Positive | 4397860 - 4398609 | 27482.4 |
| tetratricopeptide repeat family protein | M099_4069 | Not Available | Positive | 4398646 - 4400346 | 62540.1 |
| trna(ile)-lysidine synthetase | M099_4070 | Not Available | Negative | 4400485 - 4401789 | 50023.4 |
| ferrous iron transport protein b | M099_4071 | Not Available | Positive | 4401910 - 4404378 | 92786.5 |
| Trna-cys | Not Available | Not Available | Positive | 4404691 - 4404765 | Not Available |
| transposase dde domain protein | M099_4073 | Not Available | Negative | 4405033 - 4405938 | 35030.2 |
| glycosyl transferase | M099_4074 | Not Available | Positive | 4406100 - 4406273 | 6575.86 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

