Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s1 rna binding domain protein | M099_4055 | Not Available | Positive | 4381415 - 4383544 | 79644.4 |
| nudix domain protein | M099_4056 | Not Available | Positive | 4383567 - 4384364 | 30147.3 |
| aspt/yide/ybjl antiporter duplication domain protein | M099_4057 | Not Available | Positive | 4384441 - 4386102 | 59396.9 |
| firmicute fructose-1,6-bisphosphatase family protein | M099_4058 | Not Available | Positive | 4386112 - 4388112 | 76533.3 |
| aspartate 1-decarboxylase | M099_4059 | Not Available | Negative | 4388242 - 4388592 | 12822.7 |
| pantoate--beta-alanine ligase | M099_4060 | Not Available | Negative | 4388614 - 4389462 | 31339.6 |
| starch synthase catalytic domain protein | M099_4061 | Not Available | Positive | 4389814 - 4390638 | 31933.0 |
| hypothetical protein | M099_4062 | Not Available | Positive | 4390658 - 4392088 | 53536.1 |
| hypothetical protein | M099_4063 | Not Available | Negative | 4392338 - 4392715 | 13929.4 |
| dna polymerase iii, beta subunit | M099_4064 | Not Available | Positive | 4392971 - 4393993 | 37560.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

