Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine phosphatase super family protein | M099_4035 | Not Available | Negative | 4343395 - 4344675 | 48824.4 |
| starch-binding associating with outer membrane family protein | M099_4036 | Not Available | Negative | 4344690 - 4346465 | 67561.8 |
| tonb-linked outer membrane, susc/raga family protein | M099_4037 | Not Available | Negative | 4346489 - 4349638 | 116070.0 |
| starch-binding associating with outer membrane family protein | M099_4038 | Not Available | Negative | 4350118 - 4352067 | 72937.1 |
| tonb-linked outer membrane, susc/raga family protein | M099_4039 | Not Available | Negative | 4352113 - 4355325 | 118762.0 |
| hypothetical protein | M099_4040 | Not Available | Negative | 4355348 - 4355599 | 9913.82 |
| rna polymerase sigma factor, sigma-70 family protein | M099_4041 | Not Available | Negative | 4355681 - 4356235 | 21477.1 |
| putative pectin lyase fold/virulence factor | M099_4042 | Not Available | Negative | 4356422 - 4359508 | 115869.0 |
| putative pectate lyase | M099_4043 | Not Available | Negative | 4359510 - 4361135 | 59316.2 |
| hypothetical protein | M099_4044 | Not Available | Negative | 4361392 - 4362039 | 24313.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

