Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-lactamase superfamily domain protein | M099_4025 | Not Available | Negative | 4328522 - 4329307 | 30202.6 |
| hypothetical protein | M099_4026 | Not Available | Negative | 4329323 - 4330513 | 45188.1 |
| reactive intermediate/imine deaminase family protein | M099_4027 | Not Available | Negative | 4330676 - 4331053 | 13256.1 |
| transcription termination factor rho | M099_4028 | Not Available | Positive | 4331481 - 4333490 | 74254.4 |
| right handed beta helix region family protein | M099_4029 | Not Available | Positive | 4333714 - 4335594 | 70520.4 |
| glycosyl hydrolases 31 family protein | M099_4030 | Not Available | Positive | 4335605 - 4337851 | 86484.6 |
| 5-methyltetrahydrofolate--homocysteine s-methyltransferase domain protein | M099_4031 | Not Available | Positive | 4337857 - 4339659 | 66726.0 |
| sodium symporter family protein | M099_4032 | Not Available | Positive | 4339693 - 4341264 | 57723.5 |
| vitamin b12 dependent methionine synthase, activation domain protein | M099_4033 | Not Available | Negative | 4341556 - 4342242 | 25412.4 |
| uroporphyrinogen decarboxylase family protein | M099_4034 | Not Available | Negative | 4342235 - 4343245 | 36514.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

