Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane family protein | M099_4005 | Not Available | Negative | 4307678 - 4309654 | 74933.2 |
| tonb-linked outer membrane, susc/raga family protein | M099_4006 | Not Available | Negative | 4309673 - 4312855 | 118473.0 |
| phage integrase family protein | M099_4007 | Not Available | Positive | 4313279 - 4314325 | 40946.1 |
| hypothetical protein | M099_4008 | Not Available | Positive | 4314692 - 4314868 | 6523.94 |
| hypothetical protein | M099_4009 | Not Available | Negative | 4314887 - 4315183 | 11698.0 |
| putative transposase | M099_4010 | Not Available | Negative | 4315256 - 4315591 | 13381.5 |
| hypothetical protein | M099_4011 | Not Available | Positive | 4315759 - 4315956 | 7710.61 |
| trna (guanine(37)-n(1))-methyltransferase | M099_4012 | Not Available | Negative | 4316012 - 4316680 | 25182.3 |
| dna ligase, nad-dependent | M099_4013 | Not Available | Positive | 4316779 - 4318776 | 75175.7 |
| dihydrodipicolinate synthase | M099_4014 | Not Available | Positive | 4318878 - 4319771 | 32789.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

