Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative transposase | M099_3985 | Not Available | Negative | 4278442 - 4278906 | 17693.4 |
| transposase dde domain protein | M099_3986 | Not Available | Negative | 4278925 - 4279521 | 22282.3 |
| hypothetical protein | M099_3987 | Not Available | Positive | 4279953 - 4280144 | 7652.25 |
| hypothetical protein | M099_3988 | Not Available | Negative | 4280505 - 4280654 | 5930.23 |
| putative aaa-atpase family protein | M099_3989 | Not Available | Positive | 4280671 - 4281837 | 45351.9 |
| hypothetical protein | M099_3990 | Not Available | Positive | 4282036 - 4282221 | 7239.64 |
| hypothetical protein | M099_3991 | Not Available | Negative | 4282359 - 4285658 | 124967.0 |
| gdsl-like lipase/acylhydrolase family protein | M099_3992 | Not Available | Negative | 4285680 - 4287323 | 60873.2 |
| rhamnogalacturonan lyase yesw | M099_3993 | Not Available | Negative | 4287471 - 4289297 | 66911.8 |
| glycosyl hydrolases family 2, sugar binding domain protein | M099_3994 | Not Available | Negative | 4289422 - 4292427 | 114591.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

