Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh-ubiquinone/plastoquinone oxidoreductase chain 4l family protein | M099_3955 | Not Available | Positive | 4250838 - 4251146 | 11758.6 |
| proton-translocating nadh-quinone oxidoreductase, chain l family protein | M099_3956 | Not Available | Positive | 4251149 - 4253050 | 70385.4 |
| proton-translocating nadh-quinone oxidoreductase, chain m family protein | M099_3957 | Not Available | Positive | 4253194 - 4254585 | 50436.3 |
| proton-translocating nadh-quinone oxidoreductase, chain n family protein | M099_3958 | Not Available | Positive | 4254644 - 4256038 | 51242.1 |
| glycosyl hydrolase family 88 family protein | M099_3959 | Not Available | Positive | 4256214 - 4257440 | 46630.1 |
| histidine kinase-, dna gyrase b-, and hsp90-like atpase family protein | M099_3960 | Not Available | Negative | 4257442 - 4257684 | 8923.97 |
| putative exo-poly-alpha-d-galacturonosidase | M099_3961 | Not Available | Positive | 4258119 - 4259525 | 52418.7 |
| transposase, mutator family protein | M099_3962 | Not Available | Positive | 4259678 - 4260045 | 13683.4 |
| hypothetical protein | M099_3963 | Not Available | Positive | 4260173 - 4260370 | 7710.61 |
| glycosyl transferases group 1 family protein | M099_3964 | Not Available | Negative | 4260512 - 4261747 | 47390.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

