Phocaeicola vulgatus str. 3975 RP4

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus str. 3975 RP4 is a Gram-positive, anaerobic bacterium characterized by its rod shape and absence of mobility. This organism is classified as host-associated, indicating a relationship with a specific host environment, yet it is also described as free-living, suggesting it can survive independently under certain conditions. The bacterium has a unique structural profile; it possesses two membranes and contains a single replicon. Its cell arrangement is typically observed as singles, which may influence its interactions within its habitat. P. vulgatus str. 3975 RP4 is mesophilic, thriving within a moderate temperature range that is conducive to its metabolic processes. The presence of flagella indicates potential for motility in a broader context, but the organism itself is not mobile. This trait may play a role in its ecological niche, as it relies on environmental conditions for distribution rather than active movement. Understanding the characteristics of P. vulgatus str. 3975 RP4 contributes to insights into its role in the microbiome of hosts, where it may participate in various biotic interactions. Its anaerobic nature and free-living capabilities suggest it could be involved in nutrient cycling within its habitat, influencing the availability of resources and the overall microbial community structure. Accessions indicate that its genetic information is cataloged for further study, providing a basis for exploring its functions and potential applications in microbiology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strain3975 RP4

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus str. 3975 RP4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus str. 3975 RP4 gbf3975RP4.contig.183, whole

Gene Summary

Adenine Count

1474624 bp

Thymine Count

1407491 bp

Guanine Count

1006342 bp

Cytosine Count

1101240 bp

Genome Length

4989697 bp

Protein-coding Genes

4567 genes

Non-Coding Genes

121 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gscfa family proteinM099_3945Not AvailableNegative4239807 - 424079338641.5
1-deoxy-d-xylulose-5-phosphate synthaseM099_3946Not AvailablePositive4240886 - 424278470238.9
nad(p)-binding family proteinM099_3947Not AvailablePositive4242797 - 424413749307.5
cation transport family proteinM099_3948Not AvailablePositive4244137 - 424559153451.2
nadh-ubiquinone/plastoquinone oxidoreductase, chain 3 family proteinM099_3949Not AvailablePositive4246175 - 424652513099.5
nadh-quinone oxidoreductase, b subunitM099_3950Not AvailablePositive4246516 - 424711222081.9
respiratory-chain nadh dehydrogenase, 49 kd subunitM099_3951Not AvailablePositive4247109 - 424866859743.6
nadh dehydrogenase family proteinM099_3952Not AvailablePositive4248846 - 424986838125.1
4fe-4s binding domain proteinM099_3953Not AvailablePositive4249868 - 425033217400.3
nadh-ubiquinone/plastoquinone oxidoreductase chain 6 family proteinM099_3954Not AvailablePositive4250329 - 425083218224.2

Displaying genes 3951 – 3960 of 4688 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.