Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | M099_3925 | Not Available | Negative | 4215735 - 4215851 | 4354.48 |
| hypothetical protein | M099_3926 | Not Available | Negative | 4215814 - 4216137 | 12286.2 |
| hypothetical protein | M099_3927 | Not Available | Negative | 4216248 - 4216424 | 7035.38 |
| hypothetical protein | M099_3928 | Not Available | Negative | 4216414 - 4216608 | 7677.68 |
| rna polymerase sigma factor, sigma-70 family protein | M099_3929 | Not Available | Positive | 4216753 - 4217343 | 23105.0 |
| fecr family protein | M099_3930 | Not Available | Positive | 4217397 - 4218428 | 39844.9 |
| tonb-linked outer membrane, susc/raga family protein | M099_3931 | Not Available | Positive | 4218500 - 4221841 | 124106.0 |
| starch-binding associating with outer membrane family protein | M099_3932 | Not Available | Positive | 4221847 - 4223469 | 62033.9 |
| alpha-1,3/4-fucosidase domain protein | M099_3933 | Not Available | Positive | 4223550 - 4225502 | 73793.8 |
| hypothetical protein | M099_3934 | Not Available | Negative | 4225763 - 4226140 | 14612.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

