Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bacterial regulatory helix-turn-helix s, arac family protein | M099_3915 | Not Available | Negative | 4200873 - 4203575 | 103054.0 |
| response regulator | M099_3916 | Not Available | Positive | 4203532 - 4203819 | 10951.0 |
| hypothetical protein | M099_3917 | Not Available | Negative | 4204059 - 4204217 | 6013.7 |
| hypothetical protein | M099_3918 | Not Available | Negative | 4204342 - 4205739 | 52986.9 |
| bacterial dna-binding family protein | M099_3919 | Not Available | Positive | 4206068 - 4206748 | 25970.1 |
| rna polymerase sigma-70 factor, expansion 1 family protein | M099_3920 | Not Available | Negative | 4206941 - 4207507 | 22251.9 |
| fecr family protein | M099_3921 | Not Available | Positive | 4207651 - 4208664 | 38548.0 |
| tonb-linked outer membrane, susc/raga family protein | M099_3922 | Not Available | Positive | 4208918 - 4212304 | 126580.0 |
| starch-binding associating with outer membrane family protein | M099_3923 | Not Available | Positive | 4212319 - 4214121 | 69804.9 |
| type i phosphodiesterase / nucleotide pyrophosphatase family protein | M099_3924 | Not Available | Positive | 4214126 - 4215559 | 54892.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

