Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid-a-disaccharide synthase | M099_0364 | Not Available | Negative | 394372 - 395511 | 43067.6 |
| 5'/3'-nucleotidase sure | M099_0365 | Not Available | Negative | 395508 - 396281 | 28332.7 |
| cobq/cobb/mind/para nucleotide binding domain protein | M099_0366 | Not Available | Positive | 396539 - 397306 | 28003.1 |
| parb/repb/spo0j family partition domain protein | M099_0367 | Not Available | Positive | 397310 - 398206 | 33344.2 |
| hypothetical protein | M099_0368 | Not Available | Positive | 398276 - 398983 | 26895.4 |
| lysm domain protein | M099_0369 | Not Available | Positive | 398988 - 400250 | 47706.3 |
| rela/spot family protein | M099_0370 | Not Available | Positive | 400352 - 402622 | 86308.0 |
| merr regulatory family protein | M099_0371 | Not Available | Negative | 402714 - 403061 | 13742.9 |
| peptidase m23 family protein | M099_0372 | Not Available | Negative | 403095 - 404063 | 36405.9 |
| alanine--trna ligase | M099_0373 | Not Available | Positive | 404206 - 406821 | 97267.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

