Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deoc/lacd aldolase family protein | M099_3835 | Not Available | Positive | 4090486 - 4091535 | 38207.7 |
| phosphoglycerate mutase 1 family protein | M099_3836 | Not Available | Positive | 4091549 - 4092298 | 28620.3 |
| hsp20/alpha crystallin family protein | M099_3837 | Not Available | Positive | 4092374 - 4092802 | 16605.9 |
| rna polymerase sigma factor, sigma-70 family protein | M099_3838 | Not Available | Positive | 4092904 - 4093401 | 19554.6 |
| 6-phosphofructokinase | M099_3839 | Not Available | Positive | 4093424 - 4094410 | 35701.8 |
| sodium/hydrogen exchanger family protein | M099_3840 | Not Available | Positive | 4094424 - 4096670 | 82205.9 |
| alpha-glucan phosphorylases family protein | M099_3841 | Not Available | Positive | 4096698 - 4099256 | 97897.3 |
| arginase family protein | M099_3842 | Not Available | Positive | 4099273 - 4100082 | 30907.8 |
| methylglyoxal synthase | M099_3843 | Not Available | Positive | 4100192 - 4100671 | 18304.8 |
| hypothetical protein | M099_3844 | Not Available | Negative | 4101685 - 4101807 | 4661.75 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

