Phocaeicola vulgatus str. 3975 RP4

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus str. 3975 RP4 is a Gram-positive, anaerobic bacterium characterized by its rod shape and absence of mobility. This organism is classified as host-associated, indicating a relationship with a specific host environment, yet it is also described as free-living, suggesting it can survive independently under certain conditions. The bacterium has a unique structural profile; it possesses two membranes and contains a single replicon. Its cell arrangement is typically observed as singles, which may influence its interactions within its habitat. P. vulgatus str. 3975 RP4 is mesophilic, thriving within a moderate temperature range that is conducive to its metabolic processes. The presence of flagella indicates potential for motility in a broader context, but the organism itself is not mobile. This trait may play a role in its ecological niche, as it relies on environmental conditions for distribution rather than active movement. Understanding the characteristics of P. vulgatus str. 3975 RP4 contributes to insights into its role in the microbiome of hosts, where it may participate in various biotic interactions. Its anaerobic nature and free-living capabilities suggest it could be involved in nutrient cycling within its habitat, influencing the availability of resources and the overall microbial community structure. Accessions indicate that its genetic information is cataloged for further study, providing a basis for exploring its functions and potential applications in microbiology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strain3975 RP4

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus str. 3975 RP4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus str. 3975 RP4 gbf3975RP4.contig.183, whole

Gene Summary

Adenine Count

1474624 bp

Thymine Count

1407491 bp

Guanine Count

1006342 bp

Cytosine Count

1101240 bp

Genome Length

4989697 bp

Protein-coding Genes

4567 genes

Non-Coding Genes

121 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dimethyladenosine transferaseM099_0353Not AvailablePositive384341 - 38518331968.9
magnesium transporterM099_0354Not AvailablePositive385215 - 38655549694.8
hypothetical proteinM099_0355Not AvailablePositive386816 - 38862470097.0
Trna-glnNot AvailableNot AvailablePositive388779 - 388849Not Available
oligomerization domain proteinM099_0358Not AvailablePositive389169 - 38952813409.9
atp-dependent metallopeptidase hflb family proteinM099_0359Not AvailablePositive389546 - 39155274632.1
cytidylyltransferase family proteinM099_0360Not AvailablePositive391711 - 39255030824.3
hypothetical proteinM099_0361Not AvailableNegative392542 - 3926674538.48
transposase dde domain proteinM099_0362Not AvailableNegative392721 - 39362635030.2
nigd-like family proteinM099_0363Not AvailableNegative393728 - 39431522066.6

Displaying genes 371 – 380 of 4688 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.