Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mac/perforin domain protein | M099_3674 | Not Available | Positive | 3970953 - 3972632 | 63365.5 |
| putative lipoprotein | M099_3675 | Not Available | Positive | 3972709 - 3973104 | 14967.8 |
| hypothetical protein | M099_3676 | Not Available | Positive | 3973128 - 3973259 | 5403.44 |
| putative helix-turn-helix domain-containing protein | M099_3677 | Not Available | Negative | 3973536 - 3973760 | 8730.28 |
| type iv secretory system conjugative dna transfer family protein | M099_3678 | Not Available | Negative | 3973915 - 3974681 | 28723.5 |
| transcriptional regulator, luxr family | M099_3679 | Not Available | Negative | 3974682 - 3974988 | 11299.6 |
| Trna-val | Not Available | Not Available | Positive | 3975057 - 3975134 | Not Available |
| istb-like atp binding family protein | M099_3682 | Not Available | Positive | 3975236 - 3975503 | 10092.3 |
| transposase, mutator family protein | M099_3683 | Not Available | Positive | 3975611 - 3975881 | 10080.0 |
| cysteine synthase domain protein | M099_3684 | Not Available | Positive | 3975882 - 3976020 | 4957.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

