Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadph-dependent fmn reductase family protein | M099_3594 | Not Available | Negative | 3900849 - 3901421 | 21329.5 |
| hypothetical protein | M099_3595 | Not Available | Negative | 3901421 - 3901936 | 19600.9 |
| thiamine biosynthesis protein thic | M099_3596 | Not Available | Negative | 3901958 - 3903658 | 63475.9 |
| thiazole biosynthesis thig family protein | M099_3597 | Not Available | Negative | 3903667 - 3904440 | 27519.5 |
| thiamine-phosphate pyrophosphorylase | M099_3598 | Not Available | Negative | 3904458 - 3905069 | 22492.4 |
| thiamine biosynthesis protein this | M099_3599 | Not Available | Negative | 3905074 - 3905274 | 7153.82 |
| superoxide dismutase | M099_3600 | Not Available | Negative | 3905660 - 3906241 | 22001.8 |
| uvrd/rep helicase n-terminal domain protein | M099_3601 | Not Available | Positive | 3906386 - 3908776 | 91514.8 |
| carboxynorspermidine decarboxylase | M099_3602 | Not Available | Positive | 3908809 - 3909972 | 44380.1 |
| Trna-gly | Not Available | Not Available | Positive | 3910146 - 3910218 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

