Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc-2 type transporter family protein | M099_3464 | Not Available | Negative | 3788198 - 3789304 | 41604.2 |
| abc-2 type transporter family protein | M099_3465 | Not Available | Negative | 3789317 - 3790423 | 41463.6 |
| heme abc exporter, atp-binding protein ccma | M099_3466 | Not Available | Negative | 3790446 - 3791900 | 54636.1 |
| hlyd secretion family protein | M099_3467 | Not Available | Negative | 3791909 - 3792805 | 33034.6 |
| outer membrane efflux family protein | M099_3468 | Not Available | Negative | 3792792 - 3794090 | 49688.8 |
| bacterial regulatory s, tetr family protein | M099_3469 | Not Available | Negative | 3794087 - 3794704 | 23930.1 |
| 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase family protein | M099_3470 | Not Available | Negative | 3795150 - 3795524 | 14212.0 |
| 3-deoxy-d-manno-octulosonate cytidylyltransferase | M099_3471 | Not Available | Positive | 3795603 - 3796361 | 28101.7 |
| peptidase m16 inactive domain protein | M099_3472 | Not Available | Positive | 3796437 - 3797648 | 45761.1 |
| morn repeat family protein | M099_3473 | Not Available | Positive | 3797720 - 3798838 | 42526.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

