Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mate efflux family protein | M099_3454 | Not Available | Negative | 3776965 - 3778308 | 49290.3 |
| serine hydroxymethyltransferase family protein | M099_3455 | Not Available | Negative | 3778507 - 3779772 | 46201.9 |
| outer membrane beta-barrel domain protein | M099_3456 | Not Available | Negative | 3780034 - 3780753 | 27386.5 |
| flavin reductase like domain protein | M099_3457 | Not Available | Negative | 3780763 - 3781350 | 21914.5 |
| aspartate carbamoyltransferase, regulatory subunit | M099_3458 | Not Available | Negative | 3781356 - 3781817 | 17148.9 |
| aspartate carbamoyltransferase | M099_3459 | Not Available | Negative | 3781832 - 3782773 | 36259.7 |
| penicillin binding transpeptidase domain protein | M099_3460 | Not Available | Positive | 3782955 - 3785261 | 87410.0 |
| hypothetical protein | M099_3461 | Not Available | Positive | 3785468 - 3786295 | 31907.4 |
| bacterial regulatory helix-turn-helix s, arac family protein | M099_3462 | Not Available | Negative | 3786370 - 3787293 | 36234.9 |
| fructose-6-phosphate aldolase | M099_3463 | Not Available | Negative | 3787445 - 3788101 | 23527.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

