Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | M099_3434 | Not Available | Negative | 3752228 - 3752476 | 9399.67 |
| hypothetical protein | M099_3435 | Not Available | Positive | 3752489 - 3753301 | 32059.8 |
| transposase dde domain protein | M099_3436 | Not Available | Positive | 3753523 - 3754146 | 24869.4 |
| hypothetical protein | M099_3437 | Not Available | Negative | 3754255 - 3755751 | 58022.6 |
| pyruvate, phosphate dikinase | M099_3438 | Not Available | Negative | 3755965 - 3758685 | 99866.6 |
| 23s rrna (uracil-5-)-methyltransferase ruma | M099_3439 | Not Available | Positive | 3758884 - 3760305 | 54018.2 |
| pseudouridine synthase, rlua family protein | M099_3440 | Not Available | Positive | 3760443 - 3761276 | 32237.2 |
| hypothetical protein | M099_3441 | Not Available | Negative | 3761237 - 3761359 | 4593.62 |
| prolyl oligopeptidase family protein | M099_3442 | Not Available | Negative | 3762395 - 3764515 | 79823.9 |
| hypothetical protein | M099_3443 | Not Available | Negative | 3764518 - 3764682 | 6661.26 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

