Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | M099_3404 | Not Available | Negative | 3719866 - 3720111 | 9220.3 |
| tpr repeat family protein | M099_3405 | Not Available | Negative | 3720228 - 3721886 | 63734.8 |
| putative aaa-atpase family protein | M099_3406 | Not Available | Positive | 3722108 - 3722287 | 7092.65 |
| hypothetical protein | M099_3407 | Not Available | Positive | 3722284 - 3722409 | 4841.86 |
| outer membrane insertion c-terminal signal domain protein | M099_3408 | Not Available | Negative | 3722453 - 3723142 | 25264.2 |
| tpr repeat family protein | M099_3409 | Not Available | Negative | 3723277 - 3724944 | 64185.7 |
| autotransporter beta-domain protein | M099_3410 | Not Available | Negative | 3724987 - 3725574 | 21953.3 |
| putative membrane protein | M099_3411 | Not Available | Negative | 3725593 - 3725730 | 5305.79 |
| glycosyl hydrolase family 20, catalytic domain protein | M099_3412 | Not Available | Negative | 3725782 - 3727737 | 74324.6 |
| dna mismatch repair protein muts | M099_3413 | Not Available | Negative | 3727811 - 3730423 | 97854.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

