Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside recognition family protein | M099_3384 | Not Available | Positive | 3699230 - 3700462 | 44133.1 |
| putative rrna maturation factor ybey | M099_3385 | Not Available | Positive | 3700507 - 3700923 | 15838.9 |
| hypothetical protein | M099_3386 | Not Available | Positive | 3701150 - 3701683 | 20261.5 |
| spfh domain / band 7 family protein | M099_3387 | Not Available | Positive | 3701709 - 3703409 | 62444.3 |
| trna uridine 5-carboxymethylaminomethyl modification enzyme gida | M099_3388 | Not Available | Positive | 3703556 - 3705427 | 69615.1 |
| adenine phosphoribosyltransferase | M099_3389 | Not Available | Positive | 3705487 - 3706011 | 19189.4 |
| excinuclease abc subunit c | M099_3390 | Not Available | Positive | 3706241 - 3708061 | 69878.8 |
| d-tyrosyl-trna(tyr) deacylase | M099_3391 | Not Available | Positive | 3708300 - 3708671 | 13548.4 |
| phosphoribosyl-atp pyrophosphohydrolase family protein | M099_3392 | Not Available | Positive | 3708671 - 3708991 | 12338.7 |
| deoxyribose-phosphate aldolase | M099_3393 | Not Available | Positive | 3708998 - 3709945 | 34798.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

