Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane family protein | M099_3374 | Not Available | Negative | 3684027 - 3685667 | 62927.7 |
| tonb-linked outer membrane, susc/raga family protein | M099_3375 | Not Available | Negative | 3685674 - 3688970 | 121137.0 |
| fecr family protein | M099_3376 | Not Available | Negative | 3689072 - 3690106 | 40070.7 |
| rna polymerase sigma-70 factor, expansion 1 family protein | M099_3377 | Not Available | Negative | 3690152 - 3690712 | 21746.7 |
| type iv secretory system conjugative dna transfer family protein | M099_3378 | Not Available | Negative | 3691301 - 3691891 | 22533.8 |
| ftsx-like permease family protein | M099_3379 | Not Available | Positive | 3692371 - 3694352 | 74504.5 |
| phage integrase family protein | M099_3380 | Not Available | Negative | 3694902 - 3695840 | 36218.7 |
| l,d-transpeptidase catalytic domain protein | M099_3381 | Not Available | Positive | 3696048 - 3697067 | 38958.9 |
| l,d-transpeptidase catalytic domain protein | M099_3382 | Not Available | Positive | 3697112 - 3697867 | 27562.1 |
| putative dna-damage-inducible protein d | M099_3383 | Not Available | Negative | 3697891 - 3698622 | 27426.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

