Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | M099_3294 | Not Available | Negative | 3581969 - 3584200 | 85661.7 |
| hypothetical protein | M099_3295 | Not Available | Negative | 3584213 - 3585655 | 54113.9 |
| f5/8 type c domain protein | M099_3296 | Not Available | Negative | 3585655 - 3588885 | 121369.0 |
| glycosyl hydrolases family 2, sugar binding domain protein | M099_3297 | Not Available | Negative | 3589033 - 3591873 | 106110.0 |
| beta galactosidase small chain family protein | M099_3298 | Not Available | Negative | 3591958 - 3595149 | 122107.0 |
| hypothetical protein | M099_3299 | Not Available | Negative | 3595279 - 3596778 | 55427.2 |
| tonb-linked outer membrane, susc/raga family protein | M099_3300 | Not Available | Negative | 3596804 - 3599803 | 110295.0 |
| putative outer membrane protein, probably involved in nutrient binding protein | M099_3301 | Not Available | Negative | 3600090 - 3601535 | 54470.2 |
| tonb-linked outer membrane, susc/raga family protein | M099_3302 | Not Available | Negative | 3601557 - 3604628 | 113449.0 |
| aspt/yide/ybjl antiporter duplication domain protein | M099_3303 | Not Available | Negative | 3604944 - 3606452 | 53343.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

