Phocaeicola vulgatus str. 3975 RP4

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus str. 3975 RP4 is a Gram-positive, anaerobic bacterium characterized by its rod shape and absence of mobility. This organism is classified as host-associated, indicating a relationship with a specific host environment, yet it is also described as free-living, suggesting it can survive independently under certain conditions. The bacterium has a unique structural profile; it possesses two membranes and contains a single replicon. Its cell arrangement is typically observed as singles, which may influence its interactions within its habitat. P. vulgatus str. 3975 RP4 is mesophilic, thriving within a moderate temperature range that is conducive to its metabolic processes. The presence of flagella indicates potential for motility in a broader context, but the organism itself is not mobile. This trait may play a role in its ecological niche, as it relies on environmental conditions for distribution rather than active movement. Understanding the characteristics of P. vulgatus str. 3975 RP4 contributes to insights into its role in the microbiome of hosts, where it may participate in various biotic interactions. Its anaerobic nature and free-living capabilities suggest it could be involved in nutrient cycling within its habitat, influencing the availability of resources and the overall microbial community structure. Accessions indicate that its genetic information is cataloged for further study, providing a basis for exploring its functions and potential applications in microbiology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strain3975 RP4

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus str. 3975 RP4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus str. 3975 RP4 gbf3975RP4.contig.183, whole

Gene Summary

Adenine Count

1474624 bp

Thymine Count

1407491 bp

Guanine Count

1006342 bp

Cytosine Count

1101240 bp

Genome Length

4989697 bp

Protein-coding Genes

4567 genes

Non-Coding Genes

121 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinM099_3254Not AvailablePositive3539659 - 35398687878.6
respiratory-chain nadh dehydrogenase 24 kd subunitM099_3255Not AvailableNegative3540147 - 35403808542.73
hypothetical proteinM099_3256Not AvailablePositive3540453 - 35406627826.78
hypothetical proteinM099_3257Not AvailableNegative3540695 - 354224554947.7
type i phosphodiesterase / nucleotide pyrophosphatase family proteinM099_3258Not AvailableNegative3542527 - 354412560884.1
glycosyl hydrolases family 2, sugar binding domain proteinM099_3259Not AvailableNegative3544240 - 3546918101256.0
glycosyl hydrolase family 20, catalytic domain proteinM099_3260Not AvailableNegative3546981 - 354906280552.9
glycoside hydrolase family 2, candidate beta-glycosidaseM099_3261Not AvailableNegative3549059 - 355150692763.4
putative outer membrane protein, probably involved in nutrient binding proteinM099_3262Not AvailableNegative3551605 - 355314659338.3
tonb-linked outer membrane, susc/raga family proteinM099_3263Not AvailableNegative3553160 - 3556444121454.0

Displaying genes 3261 – 3270 of 4688 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.