Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbamoyl-phosphate synthase, large subunit | M099_3244 | Not Available | Negative | 3526079 - 3529300 | 119434.0 |
| hypothetical protein | M099_3245 | Not Available | Negative | 3529555 - 3530346 | 29912.6 |
| tryptophan--trna ligase | M099_3246 | Not Available | Positive | 3530450 - 3531544 | 41376.8 |
| Trna-val | Not Available | Not Available | Positive | 3531760 - 3531837 | Not Available |
| bacterial regulatory s, luxr family protein | M099_3248 | Not Available | Positive | 3531906 - 3532556 | 24599.1 |
| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase | M099_3249 | Not Available | Negative | 3532553 - 3533617 | 39768.7 |
| cysteine synthase a | M099_3250 | Not Available | Negative | 3533624 - 3534574 | 33551.6 |
| endonuclease/exonuclease/phosphatase family protein | M099_3251 | Not Available | Positive | 3534720 - 3535658 | 34976.7 |
| calcineurin-like phosphoesterase family protein | M099_3252 | Not Available | Positive | 3535686 - 3538142 | 89645.5 |
| helicase conserved c-terminal domain protein | M099_3253 | Not Available | Positive | 3538346 - 3539650 | 48294.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

