Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sodium ion-translocating decarboxylase, beta subunit | M099_0293 | Not Available | Negative | 323554 - 324789 | 44261.9 |
| conserved carboxylase domain protein | M099_0294 | Not Available | Negative | 324789 - 326651 | 68974.7 |
| oxaloacetate decarboxylase, gamma chain family protein | M099_0295 | Not Available | Negative | 326682 - 326933 | 8725.21 |
| hypothetical protein | M099_0296 | Not Available | Negative | 326974 - 327108 | 5254.38 |
| nitroreductase family protein | M099_0297 | Not Available | Negative | 327201 - 327701 | 18769.6 |
| had hydrolase, ia, variant 1 family protein | M099_0298 | Not Available | Positive | 327764 - 328417 | 24436.4 |
| 6-phosphofructokinase | M099_0299 | Not Available | Negative | 328427 - 329407 | 35283.2 |
| doxx family protein | M099_0300 | Not Available | Positive | 329668 - 330108 | 16170.6 |
| putative abc transporter atp-binding protein | M099_0301 | Not Available | Negative | 330114 - 331109 | 39179.5 |
| aaa atpase domain protein | M099_0302 | Not Available | Negative | 331131 - 331952 | 31166.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

