Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | M099_3102 | Not Available | Positive | 3415078 - 3415410 | 12969.4 |
| hypothetical protein | M099_3103 | Not Available | Positive | 3415407 - 3415634 | 8602.18 |
| ahpc/tsa family protein | M099_3104 | Not Available | Negative | 3415665 - 3416204 | 20146.2 |
| bacterial regulatory, fis family protein | M099_3105 | Not Available | Positive | 3416322 - 3417662 | 50126.6 |
| histidine kinase-, dna gyrase b-, and hsp90-like atpase family protein | M099_3106 | Not Available | Positive | 3417778 - 3419079 | 49000.9 |
| uvrd/rep helicase n-terminal domain protein | M099_3107 | Not Available | Positive | 3419160 - 3422336 | 122565.0 |
| pd-(d/e)xk nuclease superfamily protein | M099_3108 | Not Available | Positive | 3422336 - 3425215 | 110970.0 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | M099_3109 | Not Available | Negative | 3425290 - 3426117 | 30680.1 |
| replicative dna helicase | M099_3110 | Not Available | Positive | 3426378 - 3427934 | 57459.0 |
| phenylalanine--trna ligase, beta subunit | M099_3111 | Not Available | Positive | 3428088 - 3430550 | 91165.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

