Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolases family 2, sugar binding domain protein | M099_3021 | Not Available | Positive | 3327847 - 3330714 | 110118.0 |
| rhamnogalacturonan acetylesterase rhgt domain protein | M099_3022 | Not Available | Positive | 3330733 - 3332007 | 47762.3 |
| glycosyl hydrolases 28 family protein | M099_3023 | Not Available | Positive | 3332025 - 3333509 | 54948.4 |
| hypothetical protein | M099_3024 | Not Available | Positive | 3333538 - 3334185 | 23837.6 |
| putative pkd domain-containing protein | M099_3025 | Not Available | Positive | 3334182 - 3334985 | 30936.2 |
| glycosyl hydrolases 28 family protein | M099_3026 | Not Available | Positive | 3335001 - 3336425 | 52161.9 |
| glycosyl hydrolase family 2, sugar binding domain protein | M099_3027 | Not Available | Positive | 3336442 - 3339204 | 104091.0 |
| hypothetical protein | M099_3028 | Not Available | Positive | 3339843 - 3340019 | 6888.41 |
| asparaginase family protein | M099_3029 | Not Available | Negative | 3340156 - 3341094 | 33051.6 |
| hypothetical protein | M099_3030 | Not Available | Positive | 3341615 - 3341749 | 5238.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

