Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | M099_2971 | Not Available | Negative | 3267634 - 3267768 | 5486.66 |
| rna recognition motif family protein | M099_2972 | Not Available | Positive | 3267957 - 3268142 | 6788.14 |
| hypothetical protein | M099_2973 | Not Available | Negative | 3268242 - 3269561 | 49131.1 |
| pasta domain protein | M099_2974 | Not Available | Positive | 3269738 - 3270379 | 23471.9 |
| pseudouridine synthase, rlua family protein | M099_2975 | Not Available | Positive | 3270398 - 3271471 | 40774.7 |
| d-alanine--d-alanine ligase family protein | M099_2976 | Not Available | Positive | 3271468 - 3272442 | 36067.1 |
| acyltransferase family protein | M099_2977 | Not Available | Positive | 3272471 - 3273628 | 44510.6 |
| nigd-like family protein | M099_2978 | Not Available | Positive | 3273687 - 3274337 | 24878.8 |
| rhodanese-like domain protein | M099_2979 | Not Available | Positive | 3274367 - 3274765 | 15066.1 |
| transposase is66 family protein | M099_2980 | Not Available | Negative | 3274928 - 3276493 | 60524.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

