Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor, sigma-70 family protein | M099_0263 | Not Available | Positive | 286149 - 286694 | 21010.2 |
| transmembrane amino acid transporter family protein | M099_0264 | Not Available | Positive | 286691 - 287068 | 14860.7 |
| hypothetical protein | M099_0265 | Not Available | Negative | 287142 - 287591 | 17021.0 |
| hypothetical protein | M099_0266 | Not Available | Negative | 287662 - 288654 | 37662.1 |
| seca precross-linking domain protein | M099_0267 | Not Available | Negative | 288777 - 291011 | 85005.0 |
| arc-like dna binding domain protein | M099_0268 | Not Available | Negative | 292605 - 292799 | 7483.19 |
| spfh domain / band 7 family protein | M099_0269 | Not Available | Negative | 292808 - 293758 | 35395.3 |
| tpr repeat family protein | M099_0270 | Not Available | Positive | 294330 - 296330 | 76833.1 |
| trna threonylcarbamoyl adenosine modification protein, sua5/ycio/yrdc/ywlc family | M099_0271 | Not Available | Positive | 296337 - 296951 | 23133.3 |
| mechanosensitive ion channel family protein | M099_0272 | Not Available | Positive | 297000 - 297833 | 30665.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

